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ABHgenotypeR

Guest on 19th May 2022 01:52:55 AM

  1. ABGgenotypR
  2.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:88:164
  3.  
  4. ABH
  5.   ABHgenotypeR/DESCRIPTION:3:30
  6.   ABHgenotypeR/DESCRIPTION:12:33
  7.   ABHgenotypeR/man/ABHgenotypeR.Rd:7:75
  8.   ABHgenotypeR/man/ABHgenotypeR.Rd:10:57
  9.  
  10. ABHGenosPlugin
  11.   ABHgenotypeR/man/ABHgenotypeR.Rd:11:42
  12.  
  13. ABHGenotypeR
  14.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:2:9
  15.  
  16. ABHN
  17.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:38:46
  18.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:74:196
  19.  
  20. ABHgenotypeR
  21.   ABHgenotypeR/man/ABHgenotypeR.Rd:7:8
  22.   ABHgenotypeR/man/ABHgenotypeR.Rd:9:5
  23.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:22:6
  24.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:28:6
  25.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:28:154
  26.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:33:7
  27.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:38:2
  28.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:85:185
  29.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:154:6
  30.  
  31. ABHmatrix
  32.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:57:3
  33.  
  34. AXA
  35.   ABHgenotypeR/man/correctStretches.Rd:14:16
  36.   ABHgenotypeR/man/correctStretches.Rd:14:64
  37.  
  38. AXYA
  39.   ABHgenotypeR/man/correctStretches.Rd:14:72
  40.  
  41. BMC
  42.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:25:14
  43.  
  44. BXB
  45.   ABHgenotypeR/man/correctStretches.Rd:14:23
  46.   ABHgenotypeR/man/correctStretches.Rd:15:5
  47.  
  48. BXYB
  49.   ABHgenotypeR/man/correctStretches.Rd:15:13
  50.  
  51. Furuta
  52.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:3:19
  53.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:24:2
  54.  
  55. GBS
  56.   ABHgenotypeR/man/ABHgenotypeR.Rd:10:1
  57.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:22:178
  58.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:28:117
  59.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:88:28
  60.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:115:118
  61.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:156:175
  62.  
  63. GWAS
  64.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:146:217
  65.  
  66. GenosToABHPlugin
  67.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:49:288
  68.  
  69. GenotypesToABHPlugin
  70.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:38:197
  71.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:38:393
  72.  
  73. HAAAAH
  74.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:115:377
  75.  
  76. HAAAH
  77.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:115:362
  78.  
  79. HAAH
  80.   ABHgenotypeR/man/correctUndercalledHets.Rd:14:72
  81.  
  82. HAH
  83.   ABHgenotypeR/man/correctUndercalledHets.Rd:14:16
  84.   ABHgenotypeR/man/correctUndercalledHets.Rd:14:64
  85.  
  86. HBBH
  87.   ABHgenotypeR/man/correctUndercalledHets.Rd:15:13
  88.  
  89. HBH
  90.   ABHgenotypeR/man/correctUndercalledHets.Rd:14:23
  91.   ABHgenotypeR/man/correctUndercalledHets.Rd:15:5
  92.  
  93. Nipponbare
  94.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:49:168
  95.  
  96. OL
  97.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:49:232
  98.  
  99. Oryza
  100.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:49:155
  101.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:49:210
  102.  
  103. Reuscher
  104.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:3:37
  105.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:24:10
  106.  
  107. Ths
  108.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:93:1
  109.  
  110. Tomoyuki
  111.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:3:10
  112.  
  113. XYZ
  114.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:25:27
  115.  
  116. african
  117.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:49:192
  118.  
  119. al
  120.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:24:23
  121.  
  122. alignements
  123.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:115:100
  124.  
  125. biparental
  126.   ABHgenotypeR/DESCRIPTION:11:10
  127.  
  128. bp
  129.   ABHgenotypeR/man/readABHgenotypes.Rd:32:84
  130.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:61:28
  131.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:61:230
  132.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:61:287
  133.  
  134. chrom
  135.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:58:3
  136.  
  137. correctStretches
  138.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:113:84
  139.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:117:2
  140.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:117:254
  141.  
  142. correctUnderCalledHets
  143.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:113:53
  144.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:115:2
  145.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:115:208
  146.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:115:302
  147.  
  148. csv
  149.   ABHgenotypeR/man/ABHgenotypeR.Rd:11:7
  150.   ABHgenotypeR/man/readABHgenotypes.Rd:28:30
  151.   ABHgenotypeR/man/writeABHgenotypes.Rd:5:37
  152.   ABHgenotypeR/man/writeABHgenotypes.Rd:19:30
  153.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:146:262
  154.  
  155. csvs
  156.   ABHgenotypeR/man/readABHgenotypes.Rd:29:27
  157.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:38:301
  158.  
  159. datastructure
  160.   ABHgenotypeR/man/readABHgenotypes.Rd:21:31
  161.  
  162. differencs
  163.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:110:73
  164.  
  165. differnt
  166.   ABHgenotypeR/man/plotCompareGenos.Rd:28:19
  167.  
  168. et
  169.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:24:19
  170.  
  171. formating
  172.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:38:514
  173.  
  174. functon
  175.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:101:242
  176.  
  177. genos
  178.   ABHgenotypeR/man/plotCompareGenos.Rd:15:59
  179.  
  180. genosToABH
  181.   ABHgenotypeR/man/readABHgenotypes.Rd:5:34
  182.   ABHgenotypeR/man/readABHgenotypes.Rd:25:27
  183.  
  184. ggplot
  185.   ABHgenotypeR/man/plotAlleleFreq.Rd:14:31
  186.   ABHgenotypeR/man/plotMarkerDensity.Rd:14:21
  187.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:74:308
  188.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:74:377
  189.  
  190. heterozygous
  191.   ABHgenotypeR/man/correctUndercalledHets.Rd:5:28
  192.   ABHgenotypeR/man/correctUndercalledHets.Rd:12:47
  193.   ABHgenotypeR/man/correctUndercalledHets.Rd:13:42
  194.   ABHgenotypeR/man/correctUndercalledHets.Rd:18:40
  195.   ABHgenotypeR/man/correctUndercalledHets.Rd:22:21
  196.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:38:107
  197.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:115:143
  198.  
  199. heterzygous
  200.   ABHgenotypeR/man/correctStretches.Rd:13:8
  201.   ABHgenotypeR/man/correctUndercalledHets.Rd:13:4
  202.  
  203. homozygous
  204.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:38:75
  205.  
  206. impuation
  207.   ABHgenotypeR/man/writeABHgenotypes.Rd:10:59
  208.  
  209. imputeByFlanks
  210.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:93:67
  211.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:117:200
  212.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:117:325
  213.  
  214. inlcuded
  215.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:49:36
  216.  
  217. longistaminata
  218.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:49:216
  219.  
  220. maxHapLength
  221.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:115:333
  222.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:117:302
  223.  
  224. nameA
  225.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:62:3
  226.  
  227. nameB
  228.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:62:13
  229.  
  230. ouptut
  231.   ABHgenotypeR/man/ABHgenotypeR.Rd:11:21
  232.  
  233. ouput
  234.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:85:24
  235.  
  236. plotAlleleFreq
  237.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:162:6
  238.  
  239. plotCompareGenos
  240.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:101:223
  241.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:142:5
  242.  
  243. plotGenos
  244.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:74:5
  245.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:74:344
  246.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:101:111
  247.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:111:73
  248.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:128:73
  249.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:142:64
  250.  
  251. plotMarkerDensity
  252.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:156:6
  253.  
  254. pos
  255.   ABHgenotypeR/man/readABHgenotypes.Rd:33:29
  256.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:61:3
  257.  
  258. putatively
  259.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:146:50
  260.  
  261. qtl
  262.   ABHgenotypeR/man/ABHgenotypeR.Rd:10:20
  263.   ABHgenotypeR/man/ABHgenotypeR.Rd:12:24
  264.   ABHgenotypeR/man/readABHgenotypes.Rd:29:6
  265.   ABHgenotypeR/man/writeABHgenotypes.Rd:16:31
  266.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:28:139
  267.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:28:224
  268.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:38:344
  269.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:88:109
  270.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:146:316
  271.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:154:143
  272.  
  273. readABHgenotypes
  274.   ABHgenotypeR/man/plotAlleleFreq.Rd:10:28
  275.   ABHgenotypeR/man/plotCompareGenos.Rd:13:26
  276.   ABHgenotypeR/man/plotCompareGenos.Rd:15:26
  277.   ABHgenotypeR/man/plotGenos.Rd:13:28
  278.   ABHgenotypeR/man/plotMarkerDensity.Rd:10:28
  279.   ABHgenotypeR/man/writeABHgenotypes.Rd:10:28
  280.  
  281. readPos
  282.   ABHgenotypeR/man/readABHgenotypes.Rd:32:5
  283.  
  284. rmarkdown
  285.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:6:3
  286.  
  287. sativa
  288.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:49:161
  289.  
  290. selectes
  291.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:74:56
  292.  
  293. showIndividualNames
  294.   ABHgenotypeR/man/plotGenos.Rd:32:1
  295.  
  296. showIndividualnames
  297.   ABHgenotypeR/man/plotCompareGenos.Rd:35:1
  298.  
  299. undercalled
  300.   ABHgenotypeR/man/correctUndercalledHets.Rd:5:16
  301.   ABHgenotypeR/man/correctUndercalledHets.Rd:18:28
  302.   ABHgenotypeR/man/correctUndercalledHets.Rd:22:9
  303.  
  304. usefull
  305.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:156:138
  306.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:162:136
  307.  
  308. visualizaton
  309.   ABHgenotypeR/vignettes/ABHgenotypeR-vignette.Rmd:154:50

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