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table interact

Guest on 22nd May 2022 04:09:58 AM

  1. table interact
  2. "Interaction between two regions"
  3.     (
  4.     string chrom;      "Chromosome (or contig, scaffold, etc.). For interchromosomal, use 2 records"
  5.     uint chromStart;   "Start position of lower region. For interchromosomal, set to chromStart of this region"
  6.     uint chromEnd;     "End position of upper region. For interchromosomal, set to chromEnd of this region"
  7.     string name;       "Name of item, for display.  Usually 'sourceName/targetName' or empty"
  8.     uint score;        "Score from 0-1000."
  9.     double value;      "Strength of interaction or other data value. Typically basis for score"
  10.     string exp;        "Experiment name (metadata for filtering). Use . if not applicable"
  11.     string color;      "Item color.  Specified as r,g,b or hexadecimal #RRGGBB or html color name, as in //www.w3.org/TR/css3-color/#html4."
  12.     string sourceChrom;  "Chromosome of source region (directional) or lower region. For non-directional interchromosomal, chrom of this region."
  13.     uint sourceStart;  "Start position source/lower/this region"
  14.     uint sourceEnd;    "End position in chromosome of source/lower/this region"
  15.     string sourceName;  "Identifier of source/lower/this region"
  16.     string sourceStrand; "Orientation of source/lower/this region: + or -.  Use . if not applicable"
  17.     string targetChrom; "Chromosome of target region (directional) or upper region. For non-directional interchromosomal, chrom of other region"
  18.     uint targetStart;  "Start position in chromosome of target/upper/this region"
  19.     uint targetEnd;    "End position in chromosome of target/upper/this region"
  20.     string targetName; "Identifier of target/upper/this region"
  21.     string targetStrand; "Orientation of target/upper/this region: + or -.  Use . if not applicable"
  22.     )

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