- Usage:
- illumina-dump [options] [ -A ] <accession>
- illumina-dump [options] <path>
- -A, --accession Accession.
- Options:
- -D, --table-path Path to accession data.
- -O, --outdir Output directory. Default: '.'
- -N, --minSpotId Minimum spot id to output.
- -X, --maxSpotId Maximum spot id to output.
- -G, --spot-group Split into files by SPOT_GROUP (member).
- -T, --group-in-dirs Split into subdirectories instead of files.
- -K, --keep-empty-files Do not delete empty files.
- -L, --log-level Logging level: fatal|sys|int|err|warn|info. Default: info
- -+, --debug debug: APP|KFS|XML|VDB|SRA|REF|LEGREF. Default: APP
- -H, --help Prints this message.
- Format options:
- -r, --read Output READ: "seq". Default: on
- -q, --qual1 Output QUALITY, into single (1) or multiple (2) files: "qcal". Default: 1
- -p, --qual4 Output full QUALITY: "prb". Default: off
- -i, --intensity Output INTENSITY, if present: "int". Default: off
- -n, --noise Output NOISE, if present: "nse". Default: off
- -s, --signal Output SIGNAL, if present: "sig2". Default: off
- -qseq Output QSEQ format: "qseq". Default: off