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VLC.txt

Guest on 8th August 2021 11:07:48 AM

  1. Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/Ano/VL -p /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AsteI2_V3/AsteI2_V3.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AsteI2_V3/AsteI2_V3.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AsteI2_V3/AsteI2_V3.fa -o /mnt/storage/home/manuriddinov/scratch/Invertebrates/VL -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                    
  2. Sequenced Read Pairs:  88,422,839
  3.  Normal Paired: 40,123,969 (45.38%)
  4.  Chimeric Paired: 27,771,619 (31.41%)
  5.  Chimeric Ambiguous: 8,231,720 (9.31%)
  6.  Unmapped: 12,295,531 (13.91%)
  7.  Ligation Motif Present: 59,629,785 (67.44%)
  8. Alignable (Normal+Chimeric Paired): 67,895,588 (76.79%)
  9. Unique Reads: 60,102,741 (67.97%)
  10. PCR Duplicates: 7,671,896 (8.68%)
  11. Optical Duplicates: 120,951 (0.14%)
  12. Library Complexity Estimate: 276,319,851
  13. Intra-fragment Reads: 9,039,799 (10.22% / 15.04%)
  14. Below MAPQ Threshold: 2,909,454 (3.29% / 4.84%)
  15. Hi-C Contacts: 48,153,488 (54.46% / 80.12%)
  16.  Ligation Motif Present: 23,735,673  (26.84% / 39.49%)
  17.  3' Bias (Long Range): 50% - 50%
  18.  Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
  19. Inter-chromosomal: 7,840,863  (8.87% / 13.05%)
  20. Intra-chromosomal: 40,312,625  (45.59% / 67.07%)
  21. Short Range (<20Kb): 17,433,250  (19.72% / 29.01%)
  22. Long Range (>20Kb): 22,879,329  (25.87% / 38.07%)

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